MSU faculty member working on project to better understand COVID-19 genetic mutations

Contact: James Carskadon

Studio portrait of Jean-Francois Gout
Jean-Francois Gout (Photo by Logan Kirkland)

STARKVILLE, Miss.—A Mississippi State faculty member is part of an international team working to understand and predict coronavirus genetic mutations, which can aid in the development of potential treatments and vaccines for COVID-19.

Jean-Francois Gout, an assistant professor of computational biology in MSU’s Department of Biological Sciences, is a co-principal investigator on the National Science Foundation-funded research. Marc Vermulst, an assistant professor of gerontology at the University of Southern California is the principal investigator for the project, with Monique Nijhuis of Utrecht University in the Netherlands also serving as co-principal investigator.

500 Internal Server Error

Internal Server Error

The server encountered an internal error and was unable to complete your request. Either the server is overloaded or there is an error in the application.

“If a mutation increases in frequency over time, that makes the virus better at replicating,” Gout said. “However, if we see a mutation that quickly disappears, or if we see a position in the genome where we never observe a mutation, that would mean that every mutation occurring at this position could be lethal for the virus. The goal is to find these weak spots, which will help the people looking for treatments narrow down the areas that they can target.”

The virus samples will be cultured in petri dishes at UMC Utrecht in the Netherlands, in a lab that is equipped and certified to handle the virus. RNA from the samples will then be sent to USC to be processed before sequencing, generating data that Gout will download and analyze with his colleagues.

Gout said the idea for the project came about soon after the COVID-19 pandemic started. He and Vermulst have worked together on projects measuring the accuracy of DNA transcription to RNA, which employs methods initially developed to study the mutation rates of viruses. After finding a lab able to culture the virus cells, the research team applied for and received $198,000 in NSF rapid response funding from the Coronavirus Aid, Relief, and Economic Security (CARES) Act.

When the pandemic began, Gout incorporated analysis of the COVID-19 genome into his applied genomics class. He plans to use the data and analysis generated by this project in his future courses.

“I’m excited about the project,” Gout said. “It has the potential of being an important contribution for understanding the molecular evolution of the virus.”

For more on MSU’s Department of Biological Sciences, part of the College of Arts and Sciences, visit

MSU is Mississippi’s leading university, available online at